Publications

2025

1. RECOMB-seq’25

   Efficient trace reconstruction in DNA storage systems using Bidirectional Beam Search

   Zhenhao Gu ,  Hongyi Xin ,  Puru Sharma ,  Gary Yipeng Goh ,  Limsoon Wong ,  and  Niranjan Nagarajan

   In 2025 RECOMB Satellite Conference on Biological Sequence Analysis , 2025

   Bib PDF

   @inproceedings{gu2025efficient,
     title = {Efficient trace reconstruction in DNA storage systems using Bidirectional Beam Search},
     author = {Gu, Zhenhao and Xin, Hongyi and Sharma, Puru and Goh, Gary Yipeng and Wong, Limsoon and Nagarajan, Niranjan},
     booktitle = {2025 RECOMB Satellite Conference on Biological Sequence Analysis},
     year = {2025},
     url = {https://www.biorxiv.org/content/10.1101/2025.04.16.644694v1},
     organization = {RECOMB}
   }

2024

1. ATC’24

   Cost-Efficient Large Language Model Serving for Multi-turn Conversations with CachedAttention

   Bin Gao ,  Zhuomin He ,  Puru Sharma ,  Qingxuan Kang ,  Djordje Jevdjic ,  Junbo Deng ,  Xingkun Yang ,  Zhou Yu ,  and  Pengfei Zuo

   In 2024 USENIX Annual Technical Conference , 2024

   Bib PDF

   @inproceedings{bin2024attentionstore,
     title = {Cost-Efficient Large Language Model Serving for Multi-turn Conversations with CachedAttention},
     author = {Gao, Bin and He, Zhuomin and Sharma, Puru and Kang, Qingxuan and Jevdjic, Djordje and Deng, Junbo and Yang, Xingkun and Yu, Zhou and Zuo, Pengfei},
     booktitle = {2024 USENIX Annual Technical Conference},
     year = {2024},
     url = {https://www.usenix.org/system/files/atc24-gao-bin-cost.pdf},
     organization = {USENIX}
   }

2. ISPASS’24

   DNA Storage Toolkit: A Modular End-to-End DNA Data Storage Codec and Simulator

   Puru Sharma ,  Gary Goh Yipeng ,  Bin Gao ,  Longshen Ou ,  Dehui Lin ,  Deepak Sharma ,  and  Djordje Jevdjic

   In 2024 IEEE International Symposium on Performance Analysis of Systems and Software (ISPASS) , 2024

   Bib PDF

   @inproceedings{sharma2024dnatoolkit,
     title = {DNA Storage Toolkit: A Modular End-to-End DNA Data Storage Codec and Simulator},
     author = {Sharma, Puru and Goh Yipeng, Gary and Gao, Bin and Ou, Longshen and Lin, Dehui and Sharma, Deepak and Jevdjic, Djordje},
     booktitle = {2024 IEEE International Symposium on Performance Analysis of Systems and Software (ISPASS)},
     year = {2024},
     url = {https://ieeexplore.ieee.org/document/10590050/},
     organization = {IEEE}
   }

2023

1. MICRO’23

   Efficiently Enabling Block Semantics and Data Updates in DNA Storage

   Puru Sharma ,  Cheng-Kai Lim ,  Dehui Lin ,  Yash Pote ,  and  Djordje Jevdjic

   In Proceedings of the 56th Annual IEEE/ACM International Symposium on Microarchitecture , 2023

   Bib PDF

   @inproceedings{sharma2023efficiently,
     title = {Efficiently Enabling Block Semantics and Data Updates in DNA Storage},
     author = {Sharma, Puru and Lim, Cheng-Kai and Lin, Dehui and Pote, Yash and Jevdjic, Djordje},
     booktitle = {Proceedings of the 56th Annual IEEE/ACM International Symposium on Microarchitecture},
     pages = {555--568},
     year = {2023},
     doi = {10.1145/3613424.3614308},
     url = {https://dl.acm.org/doi/10.1145/3613424.3614308},
   }

2022

1. ISPASS’22

   Simulating Noisy Channels in DNA Storage

   Mayank Keoliya ,  Puru Sharma ,  and  Djordje Jevdjic

   In 2022 IEEE International Symposium on Performance Analysis of Systems and Software (ISPASS) , 2022

   Bib PDF

   @inproceedings{keoliya2022simulating,
     title = {Simulating Noisy Channels in DNA Storage},
     author = {Keoliya, Mayank and Sharma, Puru and Jevdjic, Djordje},
     booktitle = {2022 IEEE International Symposium on Performance Analysis of Systems and Software (ISPASS)},
     pages = {150--152},
     year = {2022},
     organization = {IEEE},
     doi = {10.1109/ISPASS55109.2022.00019},
   }